Galaxy is a community-driven web-based analysis platform for life science research.

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The Galaxy Team is a part of the Center for Comparative Genomics and Bioinformatics at Penn State and the Department of Biology at Johns Hopkins University. This instance of Galaxy is …

The main Galaxy instance at https://usegalaxy.org is an installation of the Galaxy software combined with many common tools and data; this site has been available since 2007 for …

The Galaxy Docker Image is an easy distributable full-fledged Galaxy installation, that can be used for testing, teaching and presenting new tools and features.

Enter that exact same term as the "type" on the HTseq-count form. Be aware that downstream tools (DeSeq2, etc) will use the 9th field to summarize counts, so each annotation line needs …

Use the "list of pairs" data collection type (forward reads are grouped into a list, reverse reads are grouped into a list - all in one step - and those are input to tools). To further manipulate the …

How to convert identifiers or add in gene symbols can vary by the tools available/installed on the Galaxy server you are working at. If at https://usegalaxy.org, the tool UniProt ID mapping and …

This Galaxy format represents genomic intervals. It is tab-separated, but has the added requirement that three of the columns must be the chromosome name, start position, and end …

Firstly, as I said in a previous message, i was pleased with the integration of built-in annotation files (mm10, Hg19 etc) in featureCounts on Galaxy main. I am now analyzing Rat genome …